1) [31]
84 2 15 H043940028 closest available to centroid only one available from this Compound C clinical trial cluster NGS paired end Illumina 283 ERR315648 47 3 16 H063920004 internationally significant in top six strains that cause disease NGS 454, paired end Illumina and mate paired Illumina paired end 211 mate paired 227 ERR315649 47 3 16 Lorraine already published in top six strains that cause disease GenBank(NC_018139.1) [23] 47 3 16 LP_617 already published in top six strains that cause disease EMBLBank(ERS166047) [32] 54* 3 16 H065000139 closest to centroid uncommon strain nothing known NGS paired end Illumina 161 ERR315650 62 3 16 H064180002 internationally significant in top Epigenetics inhibitor six strains that cause disease NGS 454 ERR315651 611 4 124 H090500162 only one in cluster unique environmental isolate NGS mate paired Illumina 276 ERR315652 87 5 17 LC6677 second of cluster common Selonsertib serogroup 3 strain – does cause disease NGS paired end Illumina 490 ERR315653 376 5 17 RR08000760 closest
to centroid unique environmental isolate NGS mate paired Illumina 235 ERR315654 1* 6 1 Paris already published GenBank (NC_006368.1) [31] 1 6 1 LP_423 already published EMBLBank(ERS166048) [32] 5 6 1 EUL00013 (83/41091) on an interesting branch of ST001 only three in database – all from small outbreak in Glasgow NGS mate paired Illumina 304 ERR315655 152 6 1 H074360702 closest to centroid uncommon – mainly environmental NGS mate paired Illumina 180 ERR315656 179 Interleukin-2 receptor 7 130 H093380153 closest to centroid
uncommon but causes disease NGS paired end Illumina 32 ERR315657 337 7 130 RR08000517 second of cluster uncommon strain appears to be phenotypically variable NGS mate paired Illumina 161 ERR315658 42 8 14 130b (Wadsworth) already published in top six strains that cause disease – globally distributed. Isolated in USA in ~1980 GenBank (FR687201.1) [33] 42 8 14 H044540088 internationally significant as above but isolated in UK in 2004 – assumed to be virulent NGS 454 ERR315659 44 8 14 H100260089 closest to centroid similar to ST42 but not so common NGS paired end Illumina 346 ERR315660 154* 9 12 LC677 4 closest to centroid seen in Canada and UK as a cause of nosocomial LD NGS mate paired Illumina 84 ERR315661 336* 9 12 Lansing-3 (sgp15TS) second of cluster Representative of L.